PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014233001
Common NameGSBRNA2T00014233001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 369aa    MW: 40633.4 Da    PI: 8.5662
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014233001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32218273156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+
  GSBRNA2T00014233001 218 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 273
                          79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.038215275IPR017930Myb domain
SuperFamilySSF466891.08E-17215276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28216276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26218273IPR006447Myb domain, plants
PfamPF002495.9E-8220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MENDYAQKMQ RCHEYVEALK EEQKKIQVFQ RELPLCLELV TQAIEACRKE LSSTSTTSEQ  60
CSEQTTSVSG GPVLEEFIPT KKIEENGEHE SPTPEEIGNN VDKKKSDWLR SVQLWNPSPD  120
TNEVSNPERV VGKKAKVVEV KPNNYNNCGG FQPFQREKKR ETDLQPAAVR AVALAPAVKV  180
VASAPATTTS STTETCAVGK EREEQVLQQQ SQSQTRRKQR RCWSPELHRR FLHALQQLGG  240
SHVATPKQIR DHMKVDGLTN DEVKSHLQKY RLHTRRPATT VTAQGNGNSQ QPQFVVVGGI  300
WVPSPQEVPP PSDVANNGGG AYAPVTLQPP PQSLPPQSPK RSVERSSGRC NSQAASSSTN  360
TTTSSPVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.34630.0leaf| root| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127661.10.0PREDICTED: uncharacterized protein LOC103852516
TrEMBLA0A078IZB90.0A0A078IZB9_BRANA; BnaA02g35660D protein
STRINGBra038360.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-107G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]